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Plateau de Transcriptomique GeT-TRiX
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Communications

Posters, Articles scientifiques

Posters

  • Plateau GeT-TRiX : Services intégrés d’analyses transcriptomiques
Poster1

 

 

 

 

 

 

Articles scientifiques

Le plateau GeT-TRiX est associé chaque année dans de nombreuses publications, en co-autorat ou en remerciement.

2024

  • Rives C, Martin CMP, Evariste L, Polizzi A, Huillet M, Lasserre F, Alquier-Bacquie V, Perrier P, Gomez J, Lippi Y, Naylies C, Levade T, Sabourdy F, Remignon H, Fafournoux P, Chassaing B, Loiseau N, Guillou H, Ellero-Simatos S, Gamet-Payrastre L, Fougerat A. Dietary Amino Acid Source Elicits Sex-Specific Metabolic Response to Diet-Induced NAFLD in Mice. Mol Nutr Food Res. 2024 Jan;68(1):e2300491. doi: 10.1002/mnfr.202300491. Epub 2023 Oct 27. PMID: 37888831 https://pubmed.ncbi.nlm.nih.gov/37888831/
  • Al-Ayoubi C, Rocher O, Naylies C, Lippi Y, Vignard J, Puel S, Puel O, Oswald IP, Soler L. More than a mutagenic Aflatoxin B1 precursor: The multiple cellular targets of Versicolorin A revealed by global gene expression analysis. Environ Pollut. 2024 Dec 15;363(Pt 1):125138. doi: 10.1016/j.envpol.2024.125138. Epub 2024 Oct 16. PMID: 39424048. https://pubmed.ncbi.nlm.nih.gov/39424048/

Remerciements

  • Seeneevassen L, Zaafour A, Sifré E, Genevois C, Nguyen TL, Pobiedonoscew Y, Giese A, Guignard J, Tiffon C, Rousseau B, Raymond AA, Belleannée G, Boeuf H, Gronnier C, Martin OCB, Giraud J, Lehours P, Dubus P, Varon C. Targeting metastasis-initiating cancer stem cells in gastric cancer with leukaemia inhibitory factor. Cell Death Discov. 2024 Mar 7;10(1):120. doi: 10.1038/s41420-024-01839-1. PMID: 38453889; PMCID: PMC10920825. https://pubmed.ncbi.nlm.nih.gov/38453889/
  • Huau G, Liaubet L, Gourdine JL, Riquet J, Renaudeau D. Multi-tissue metabolic and transcriptomic responses to a short-term heat stress in swine. BMC Genomics. 2024 Jan 23;25(1):99. doi: 10.1186/s12864-024-09999-1. PMID: 38262957; PMCID: PMC10804606. https://pubmed.ncbi.nlm.nih.gov/38262957/

2023

  • Dopavogui L, Régnier M, Polizzi A, Ponchon Q, Smati S, Klement W, Lasserre F, Lukowicz C, Lippi Y, Fougerat A, Bertrand-Michel J, Naylies C, Canlet C, Debrauwer L, Rousseau-Bacquié E, Gamet-Payrastre L, Dauriat C, Casas J, Croubels S, De Baere S, Burger HM, Chassaing B, Ellero-Simatos S, Guillou H, Oswald IP, Loiseau N. Obesity promotes fumonisin B1 hepatotoxicity. Sci Total Environ. 2023 Sep 15;891:164436. doi: 10.1016/j.scitotenv.2023.164436. Epub 2023 May 27. PMID: 37247733. https://pubmed.ncbi.nlm.nih.gov/37247733/
  • Giraud J, Seeneevassen L, Rousseau B, Bouriez D, Sifré E, Giese A, Nguyen TL, Tiffon C, Lippi Y, Azzi-Martin L, Pannequin J, Ménard A, Bessède E, Staedel C, Mégraud F, Belleannée G, Lehours P, Gronnier C, Dubus P, Varon C. CD44v3 is a marker of invasive cancer stem cells driving metastasis in gastric carcinoma. Gastric Cancer. 2023 Mar;26(2):234-249. doi: 10.1007/s10120-022-01357-y. Epub 2022 Dec 18. PMID: 36528833; PMCID: PMC9950191. https://pubmed.ncbi.nlm.nih.gov/36528833/
  • Maud L, Boyer F, Durrieu V, Bornot J, Lippi Y, Naylies C, Lorber S, Puel O, Mathieu F, Snini SP. Effect of Streptomyces roseolus Cell-Free Supernatants on the Fungal Development, Transcriptome, and Aflatoxin B1 Production of Aspergillus flavus. Toxins (Basel). 2023 Jun 30;15(7):428. doi: 10.3390/toxins15070428. PMID: 37505697; PMCID: PMC10467112. https://pubmed.ncbi.nlm.nih.gov/37505697/
  • Oliviero F, Klement W, Mary L, Dauwe Y, Lippi Y, Naylies C, Gayrard V, Marchi N, Mselli-Lakhal L. CAR Protects Females from Diet-Induced Steatosis and Associated Metabolic Disorders. Cells. 2023 Sep 6;12(18):2218. doi: 10.3390/cells12182218. PMID: 37759441; PMCID: PMC10527310. https://pubmed.ncbi.nlm.nih.gov/37759441/
  • Huillet M, Lasserre F, Gratacap MP, Engelmann B, Bruse J, Polizzi A, Fougeray T, Martin CMP, Rives C, Fougerat A, Naylies C, Lippi Y, Garcia G, Rousseau-Bacquie E, Canlet C, Debrauwer L, Rolle-Kampczyk U, von Bergen M, Payrastre B, Boutet-Robinet E, Gamet-Payrastre L, Guillou H, Loiseau N, Ellero-Simatos S. Pharmacological activation of constitutive androstane receptor induces female-specific modulation of hepatic metabolism. JHEP Rep. 2023 Oct 13;6(1):100930. doi: 10.1016/j.jhepr.2023.100930. PMID: 38149074; PMCID: PMC10749885. https://pubmed.ncbi.nlm.nih.gov/38149074/

Remerciements

  • Aupetit A, Decaunes P, Belles C, Riant E, Galitzky J, Chapouly C, Laisné M, Flores-Flores R, Chaput B, Vié K, Arnal JF, Bouloumié A, Briot A. Endothelial DLL4 Is an Adipose Depot-Specific Fasting Sensor Regulating Fatty Acid Fluxes. Arterioscler Thromb Vasc Biol. 2023 May;43(5):684-696. doi: 10.1161/ATVBAHA.122.318876. Epub 2023 Mar 16. PMID: 36924232. https://pubmed.ncbi.nlm.nih.gov/36924232/
  • Foret-Lucas C, Figueroa T, Coggon A, Houffschmitt A, Dupré G, Fusade-Boyer M, Guérin JL, Delverdier M, Bessière P, Volmer R. In Vitro and In Vivo Characterization of H5N8 High-Pathogenicity Avian Influenza Virus Neurotropism in Ducks and Chickens. Microbiol Spectr. 2023 Feb 14;11(1):e0422922. doi: 10.1128/spectrum.04229-22. Epub 2023 Jan 10. PMID: 36625654; PMCID: PMC9927090. https://pubmed.ncbi.nlm.nih.gov/36625654/
  • Karsenty C, Guilbeau-Frugier C, Genet G, Seguelas MH, Alzieu P, Cazorla O, Montagner A, Blum Y, Dubroca C, Maupoint J, Tramunt B, Cauquil M, Sulpice T, Richard S, Arcucci S, Flores-Flores R, Pataluch N, Montoriol R, Sicard P, Deney A, Couffinhal T, Senard JM, Galés C. Ephrin-B1 regulates the adult diastolic function through a late postnatal maturation of cardiomyocyte surface crests. Elife. 2023 Jan 17;12:e80904. doi: 10.7554/eLife.80904. PMID: 36649053; PMCID: PMC9844986. https://pubmed.ncbi.nlm.nih.gov/36649053/
  • Schoeler M, Ellero-Simatos S, Birkner T, Mayneris-Perxachs J, Olsson L, Brolin H, Loeber U, Kraft JD, Polizzi A, Martí-Navas M, Puig J, Moschetta A, Montagner A, Gourdy P, Heymes C, Guillou H, Tremaroli V, Fernández-Real JM, Forslund SK, Burcelin R, Caesar R. The interplay between dietary fatty acids and gut microbiota influences host metabolism and hepatic steatosis. Nat Commun. 2023 Sep 1;14(1):5329. doi: 10.1038/s41467-023-41074-3. PMID: 37658064; PMCID: PMC10474162. https://pubmed.ncbi.nlm.nih.gov/37658064/
  • Foury A, Mach N, Ruet A, Lansade L, Moisan MP. Transcriptomic signature related to poor welfare of sport horses. Compr Psychoneuroendocrinol. 2023 Aug 17;16:100201. doi: 10.1016/j.cpnec.2023.100201. PMID: 37655309; PMCID: PMC10465861. https://pubmed.ncbi.nlm.nih.gov/37655309/
  • Joosten ED, Hamelin J, Milferstedt K. Initial type and abundance of cyanobacteria determine morphotype development of phototrophic ecosystems. FEMS Microbiol Ecol. 2023 Aug 22;99(9):fiad099. doi: 10.1093/femsec/fiad099. PMID: 37653452.https://pubmed.ncbi.nlm.nih.gov/37653452/

2022

  • Dopavogui L, Polizzi A, Fougerat A, Gourbeyre P, Terciolo C, Klement W, Pinton P, Laffite J, Cossalter AM, Bailly JD, Puel O, Lippi Y, Naylies C, Guillou H, Oswald IP, Loiseau N. Tissular Genomic Responses to Oral FB1 Exposure in Pigs. Toxins (Basel). 2022 Jan 22;14(2):83. doi: 10.3390/toxins14020083. PMID: 35202111; PMCID: PMC8875869. https://pubmed.ncbi.nlm.nih.gov/35202111/
  • Fougerat A, Schoiswohl G, Polizzi A, Régnier M, Wagner C, Smati S, Fougeray T, Lippi Y, Lasserre F, Raho I, Melin V, Tramunt B, Métivier R, Sommer C, Benhamed F, Alkhoury C, Greulich F, Jouffe C, Emile A, Schupp M, Gourdy P, Dubot P, Levade T, Meynard D, Ellero-Simatos S, Gamet-Payrastre L, Panasyuk G, Uhlenhaut H, Amri EZ, Cruciani-Guglielmacci C, Postic C, Wahli W, Loiseau N, Montagner A, Langin D, Lass A, Guillou H. ATGL-dependent white adipose tissue lipolysis controls hepatocyte PPARα activity. Cell Rep. 2022 Jun 7;39(10):110910. doi: 10.1016/j.celrep.2022.110910. PMID: 35675775. https://pubmed.ncbi.nlm.nih.gov/35675775/
  • Fougeray T, Polizzi A, Régnier M, Fougerat A, Ellero-Simatos S, Lippi Y, Smati S, Lasserre F, Tramunt B, Huillet M, Dopavogui L, Salvi J, Nédélec E, Gigot V, Smith L, Naylies C, Sommer C, Haas JT, Wahli W, Duez H, Gourdy P, Gamet-Payrastre L, Benani A, Burnol AF, Loiseau N, Postic C, Montagner A, Guillou H. The hepatocyte insulin receptor is required to program the liver clock and rhythmic gene expression. Cell Rep. 2022 Apr 12;39(2):110674. doi: 10.1016/j.celrep.2022.110674. PMID: 35417722. https://pubmed.ncbi.nlm.nih.gov/35417722/
  • Giraud J, Seeneevassen L, Rousseau B, Bouriez D, Sifré E, Giese A, Nguyen TL, Tiffon C, Lippi Y, Azzi-Martin L, Pannequin J, Ménard A, Bessède E, Staedel C, Mégraud F, Belleannée G, Lehours P, Gronnier C, Dubus P, Varon C. CD44v3 is a marker of invasive cancer stem cells driving metastasis in gastric carcinoma. Gastric Cancer. 2023 Mar;26(2):234-249. doi: 10.1007/s10120-022-01357-y. Epub 2022 Dec 18. PMID: 36528833; PMCID: PMC9950191. https://pubmed.ncbi.nlm.nih.gov/36528833/
  • Pierron A, Neves M, Puel S, Lippi Y, Soler L, Miller JD, Oswald IP. Intestinal toxicity of the new type A trichothecenes, NX and 3ANX. Chemosphere. 2022 Feb;288(Pt 1):132415. doi: 10.1016/j.chemosphere.2021.132415. Epub 2021 Sep 29. PMID: 34600008. https://pubmed.ncbi.nlm.nih.gov/34600008/
  • Smati S, Polizzi A, Fougerat A, Ellero-Simatos S, Blum Y, Lippi Y, Régnier M, Laroyenne A, Huillet M, Arif M, Zhang C, Lasserre F, Marrot A, Al Saati T, Wan J, Sommer C, Naylies C, Batut A, Lukowicz C, Fougeray T, Tramunt B, Dubot P, Smith L, Bertrand-Michel J, Hennuyer N, Pradere JP, Staels B, Burcelin R, Lenfant F, Arnal JF, Levade T, Gamet-Payrastre L, Lagarrigue S, Loiseau N, Lotersztajn S, Postic C, Wahli W, Bureau C, Guillaume M, Mardinoglu A, Montagner A, Gourdy P, Guillou H. Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target. Gut. 2022 Apr;71(4):807-821. doi: 10.1136/gutjnl-2020-323323. Epub 2021 Apr 26. PMID: 33903148. https://pubmed.ncbi.nlm.nih.gov/33903148/

2021

  • Tremblay-Franco M, Canlet C, Pinton P, Lippi Y, Gautier R, Naylies C, Neves M, Oswald IP, Debrauwer L, Alassane-Kpembi I. Statistical Integration of 'Omics Data Increases Biological Knowledge Extracted from Metabolomics Data: Application to Intestinal Exposure to the Mycotoxin Deoxynivalenol. Metabolites. 2021 Jun 21;11(6):407. doi: 10.3390/metabo11060407. PMID: 34205708; PMCID: PMC8233929.https://pubmed.ncbi.nlm.nih.gov/34205708/
  • Smati S, Polizzi A, Fougerat A, Ellero-Simatos S, Blum Y, Lippi Y, Régnier M, Laroyenne A, Huillet M, Arif M, Zhang C, Lasserre F, Marrot A, Al Saati T, Wan J, Sommer C, Naylies C, Batut A, Lukowicz C, Fougeray T, Tramunt B, Dubot P, Smith L, Bertrand-Michel J, Hennuyer N, Pradere JP, Staels B, Burcelin R, Lenfant F, Arnal JF, Levade T, Gamet-Payrastre L, Lagarrigue S, Loiseau N, Lotersztajn S, Postic C, Wahli W, Bureau C, Guillaume M, Mardinoglu A, Montagner A, Gourdy P, Guillou H. Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target. Gut. 2022 Apr;71(4):807-821. doi: 10.1136/gutjnl-2020-323323. Epub 2021 Apr 26. PMID: 33903148. https://pubmed.ncbi.nlm.nih.gov/33903148/
  • Pons BJ, Pettes-Duler A, Naylies C, Taieb F, Bouchenot C, Hashim S, Rouimi P, Deslande M, Lippi Y, Mirey G, Vignard J. Chronic exposure to Cytolethal Distending Toxin (CDT) promotes a cGAS-dependent type I interferon response. Cell Mol Life Sci. 2021 Sep;78(17-18):6319-6335. doi: 10.1007/s00018-021-03902-x. Epub 2021 Jul 25. PMID: 34308492; PMCID: PMC8429409. https://pubmed.ncbi.nlm.nih.gov/34308492/
  • Moreau J, Gatimel N, Lippi Y, Tavenier G, Fauque P, Guilleman M, Naylies C, Huesca AA, Gayrard V, Parinaud J, Leandri RD. Impact of the polycarbonate strippers used in assisted reproduction techniques on embryonic development. Hum Reprod. 2021 Jan 25;36(2):331-339. doi: 10.1093/humrep/deaa290. PMID: 33246333. https://pubmed.ncbi.nlm.nih.gov/33246333/
  • Luo S, Terciolo C, Neves M, Puel S, Naylies C, Lippi Y, Pinton P, Oswald IP. Comparative sensitivity of proliferative and differentiated intestinal epithelial cells to the food contaminant, deoxynivalenol. Environ Pollut. 2021 May 15;277:116818. doi: 10.1016/j.envpol.2021.116818. Epub 2021 Feb 25. PMID: 33752036. https://pubmed.ncbi.nlm.nih.gov/33752036/
  • Costes LH, Lippi Y, Naylies C, Jamin EL, Genthon C, Bailly S, Oswald IP, Bailly JD, Puel O. The Solvent Dimethyl Sulfoxide Affects Physiology, Transcriptome and Secondary Metabolism of Aspergillus flavus. J Fungi (Basel). 2021 Dec 9;7(12):1055. doi: 10.3390/jof7121055. PMID: 34947037; PMCID: PMC8703953. https://pubmed.ncbi.nlm.nih.gov/34947037/
  • Barretto SA, Lasserre F, Huillet M, Régnier M, Polizzi A, Lippi Y, Fougerat A, Person E, Bruel S, Bétoulières C, Naylies C, Lukowicz C, Smati S, Guzylack L, Olier M, Théodorou V, Mselli-Lakhal L, Zalko D, Wahli W, Loiseau N, Gamet-Payrastre L, Guillou H, Ellero-Simatos S. The pregnane X receptor drives sexually dimorphic hepatic changes in lipid and xenobiotic metabolism in response to gut microbiota in mice. Microbiome. 2021 Apr 20;9(1):93. doi: 10.1186/s40168-021-01050-9. PMID: 33879258; PMCID: PMC8059225. https://pubmed.ncbi.nlm.nih.gov/33879258/

2020

  • Gauthier T, Duarte-Hospital C, Vignard J, Boutet-Robinet E, Sulyok M, Snini SP, Alassane-Kpembi I, Lippi Y, Puel S, Oswald IP, Puel O. Versicolorin A, a precursor in aflatoxins biosynthesis, is a food contaminant toxic for human intestinal cells. Environ Int. 2020 Apr;137:105568. doi: 10.1016/j.envint.2020.105568. Epub 2020 Feb 24. PMID: 32106047. https://pubmed.ncbi.nlm.nih.gov/32106047/
  • Moreau J, Gatimel N, Lippi Y, Tavenier G, Fauque P, Guilleman M, Naylies C, Huesca AA, Gayrard V, Parinaud J, Leandri RD. Impact of the polycarbonate strippers used in assisted reproduction techniques on embryonic development. Hum Reprod. 2021 Jan 25;36(2):331-339. doi: 10.1093/humrep/deaa290. PMID: 33246333. https://pubmed.ncbi.nlm.nih.gov/33246333/
  • Régnier M, Polizzi A, Smati S, Lukowicz C, Fougerat A, Lippi Y, Fouché E, Lasserre F, Naylies C, Bétoulières C, Barquissau V, Mouisel E, Bertrand-Michel J, Batut A, Saati TA, Canlet C, Tremblay-Franco M, Ellero-Simatos S, Langin D, Postic C, Wahli W, Loiseau N, Guillou H, Montagner A. Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity. Sci Rep. 2020 Apr 16;10(1):6489. doi: 10.1038/s41598-020-63579-3. PMID: 32300166; PMCID: PMC7162950.https://pubmed.ncbi.nlm.nih.gov/32300166/
  • Zetina-Serrano C, Rocher O, Naylies C, Lippi Y, Oswald IP, Lorber S, Puel O. The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum. Int J Mol Sci. 2020 Sep 11;21(18):6660. doi: 10.3390/ijms21186660. PMID: 32932988; PMCID: PMC7555563. https://pubmed.ncbi.nlm.nih.gov/32932988/

Date de modification : 18 avril 2025 | Date de création : 07 février 2025 | Rédaction : GP-VTI